Krakow Conference on Computational Medicine 2025

15 Oct 2025, 13:00 → 17 Oct 2025, 18:50 Europe/Warsaw

room 1.19 and 1.20 (🌍 Venue: Faculty of Computer Science AGH, Kraków )

The conference’s motto is “Enhancing Virtual Human Twin with AI solutions“. Personalised medicine, focusing on the development of in silico methods to replace in vivo and in vitro approaches, should make more effective use of the solutions brought about by the AI revolution, based on machine learning and data analysis methods—perceived not as competitive, but as supportive of existing modelling and simulation techniques.

Given the organisers’ expertise in both computer simulation and artificial intelligence, the Conference will offer an excellent opportunity to foster greater interaction between communities working in these two fields. Computer technologies and high-performance computing are of key importance to progress in computational medicine. Therefore, an additional advantage of the Conference will be the inclusion of technical aspects related to the use of new computing infrastructures.

The organisation of the Conference is the result of the experience gained by the Sano team during Sano Science Day (2023, 2024), through cooperation in the Life Science Open Space initiative (since 2019), as well as the extensive experience of the Faculty of Computer Science at AGH and the Academic Computer Centre Cyfronet AGH in this field.

Conference topics include

• Mathematical medical models
• Multiscale modelling
• Computational modelling of organs and diseases
• Patient data management and processing
• Methods of acquisition, storage and retrieval of information in medicine
• Analysis of medical images
• Machine learning models for healthcare
• Computer simulations using advanced computing infrastructures
• Surgical planning tools
• Model and simulation reproducibility and credibility
• Clinical decision support systems based on artificial intelligence
• Towards the Virtual Human Twin platform
• Ethical, legal, and social issues in VHT

Keynote Lectures

Ewa Deelman - University of Southern California

Liesbet Geris – University of Liège, KU Leuven & VPH Institute

Tomasz Gosiewski  - Jagiellonian University Medical College 

Alfons Hoekstra – University of Amsterdam

Joanna Jaworek-Korjakowska – AGH University

Emiliano Ricciardi – IMT School for Advanced Studies Lucca

Daniel Taylor – University of Sheffield

Organisers

Sano Centre for Computational Medicine, Kraków Poland	Faculty of Computer Science AGH Krakow, Poland	Academic Computer Centre Cyfronet AGH, Krakow, Poland

 Honorary patronage

The conference is held under the honorary patronage of the Mayor of the City of Kraków, Aleksander Miszalski.

 

Media patronage 

Registration and fee

No registration fee, conference by invitations

 Important dates

Deadline for abstracts  – 21 August  
Acceptance of abstracts  – 2 September  
Start of registration – 29 August 
Deadline for registration of authors  – 10 September   
Registration closed – 30 September 
 

Regulations

 Regulations of KCCM 2025

 

abstract_template_KCCM25.docx

KCCM 2025_proceedings.pdf

Wednesday, 15 October

Tutorial: BRAIN-GUT

Tutorial: HPC

Tutorial: VR

Tutorial: LEGAL

Tutorial: CACTUS

Tutorial: VVUQ

Thursday, 16 October

R: Registration

O: Opening

K1: Keynote 1

1 Building the Virtual Human Twin: from an engaged ecosystem to an incipient infrastructure

Speaker: Liesbet GERIS (University of Liège, KU Leuven & VPH Institute)

PS: Poster session

2 Development of a Diagnostic Decision-Support System for Allergic Diseases at the Voivodeship Rehabilitation Hospital for Children in Ameryka

Speaker: Paulina TWOREK (Sano Centre for Computational Medicine)

P.Tworek_KCCMA_ABSTRACT-2025.docx

3 Interpretable Machine Learning for Glioma Grading from HLA-DR–Stained Whole-Slide Images: Multi-Feature Analysis with SHAP

Speaker: Monika PYTLARZ (Sano Centre for Computational Medicine)

MonikaPytlarz-KCCM-2025_shortened.docx

4 Application of Deep Learning to Quantify Brain Microstructure

Speaker: Dominika CIUPEK (Sano Centre for Computational Medicine)

MB-VHT-template-for-KCCM-4-06-2025_Ciupek.docx

5 Beyond Accuracy: Assessing the Impact of EEG Denoising on the Diagnostic Utility of a Pre-Hospital Stroke Triage Model

Speaker: Rosmary BLANCO (Sano Centre for Computational Medicine)

KCCM-RB.docx

6 Sharp-to-Soft CT Kernel Conversion Using Quaternion and Variational Decomposition Mode

Speaker: Mahmoud NASR (Sano Centre for Computational Medicine)

Abstract-KCCM-2025.docx

7 Realistic Endoscopic Synthetic Dataset Generation Through Surgical Simulation and Diffusion Models

Speaker: Sabina MARTYNIAK (Sano Centre for Computational Medicine)

Sim2Real_.pdf

8 Dynamic Profiling of the Sinonasal Microbiome Using Nanopore Sequencing in the Diagnosis of Chronic Rhinosinusitis

Speaker: Sylwia BOŻEK (Sano Centre for Computational Medicine)

SB-abstract-for-KCCM.docx

9 Aggregating gut: on the link between neurodegeneration and bacterial functional amyloids

Speaker: Alicja WOJCIECHOWSKA (Sano Centre for Computational Medicine)

kccm_wojciechowska.docx

10 Towards Trustworthy Digital Twins in Healthcare: VVUQ Activities in the GEMINI Project

Speaker: Karol ZAJĄC (Sano - Centre for Computational Personalized Medicine)

KCCM-GEMINI_VVUQ-abstract_KZ.docx

11 Research Data Sharing Incentivisation Toolkit

Speaker: Taras ZHYHULIN (Sano Centre for Computational Medicine)

Taras-Zhyhulin-KCCM.docx

10:35 Coffee break and posters

K2: Keynote 2

12 Artificial Intelligence in Orthodontics: From Automated Diagnostics to Personalized Treatment

Speaker: Joanna JAWOREK-KORJAKOWSKA (AGH University of Science and Technology)

CT1: 4 Contributed talks

13 Augmenting not replacing: preparing the future health workforce for the digital tools revolution in clinical reasoning

Speaker: Andrzej KONONOWICZ (Jagiellonian University Medical College)

KCCM_25_abstract_final.docx

14 LLM-based psychological digital twins in social research: opportunities and dangers

Speaker: Paweł SOBKOWICZ (Sano Centre for Computational Medicine)

PSobkowicz-abstract-for-KCCM-4-06-2025_V2.docx

15 Personalizing Dyslexia Interventions with a Virtual Cognitive Twin Framework

Speaker: Suvarna REKHA CHINTA (Jagiellonian University)

Abstract.docx

16 On-Device Radiotherapy Simulation: Secure Computing in Your Browser

Speaker: Konrad MICHALIK (AGH University of Science and Technology)

KMLKLG_abstract.docx

13:00 Lunch and posters

K3: Keynote 3

17 Modeling the Sensory-Deprived Brain: Insights from Neuroimaging, Computational Neuroscience, and Machine Learning

Speaker: Emiliano RICCIARDI (IMT School for Advanced Studies Lucca)

CT2: 4 Contributed talks

18 Extracting eye movement information from fMRI images

Speaker: Cemal KOBA (Sano Centre for Computational Personalised​ Medicine)

Cemal_KCCM(3).docx

19 New approaches to bioinformatics analysis in Leiden University Medical Center: bone marrow transplant in Thalasemia patients.

Speaker: Katarzyna JURKOWSKA (AGH University of Science and Technology)

Jurkowska_katarzyna.docx

20 Exploring EEG Features Structure for Neuroscreening: A Study of Dimensionality Reduction Techniques

Speaker: Maja MARZEC (University of Warsaw)

MM-EEGDR-abstract-for-KCCM-5-09-2025.docx

21 Towards the Development of Non-Invasive Electrical Impedance Spectroscopy-based Oral Cancer Diagnosis System

Speaker: Malwina MATELLA (The University of Sheffield)

Matella_abstract.pdf

16:00 Coffee break and posters

K4: Keynote 4

22 Computing coronary physiology: Conception, Optimisation and Clinical application

Speaker: Daniel TAYLOR (University of Sheffield)

CT3: 4 Contributed talks

23 Portable Auscultation Device for Perfusion Evaluation - 5PAudio, a novel personalized Monitoring and Prediction approach

Speaker: Hamza ORAN (AGH University of Science and Technology)

KCCM_AUSCULTATION_FRIEBE.docx

24 Preliminary Evaluation of Virtual Reality Simulator for Surgery Training in International Medical Students

Speaker: Przemyslaw KORZENIOWSKI (Sano Centre for Computational Medicine)

VRSR_for_Marian_2.pdf

25 Decoder Conditioning with Tabular Data for Enhanced 3D Image Segmentation

Speakers: Tomasz SZCZEPAŃSKI (Sano Centre for Computational Personalized Medicine), Michal K. GRZESZCZYK (Sano Centre for Computational Personalized Medicine), Szymon PŁOTKA (Sano Centre for Computational Personalized Medicine)

KCCM_DeCode.docx

26 Advancing quality assurance of ion beam radiotherapy for cancers

Speaker: Leszek GRZANKA

IonTracks-abstract-Wojcik.docx

Friday, 17 October

R: Registration

K5: Keynote 5

27 Towards Digital Twins for Cerebral Blood Flow and Perfusion Pathologies

Speaker: Alfons HOEKSTRA (University of Amsterdam)

CT4: 3 Contributed talks

28 Digital Twin-Based Prognostic Modeling in Aortic Coarctation and Hypoplastic Aortic Arch

Speaker: Krystian JĘDRZEJCZAK (Warsaw University of Technology)

KCCM_krystian_jedrzejczak.docx

29 Towards personalised dynamic models of the cardiovascular system

Speaker: Karolina TLAŁKA (Sano Centre for Computational Medicine)

Abstract_send_IH.docx

Abstract_send_IH.pdf

30 Comparison of MRI-derived Cardiac Power with and without Deep Learning Acceleration

Speaker: Grace FAULKNER (University of Sheffield)

GHF Sano abstract(1).docx

10:40 Coffee break and posters

K6: Keynote 6

31 The digestive tract microbiome – where does it come from, how does it change, and what is its connection with the brain?

Speaker: Tomasz GOSIEWSKI (Jagiellonian University Medical College)

CT5: 3 Contributed talks

32 Active Learning Virtual Screening of Ultra-Large Chemical Libraries: Scalable Docking with Uncertainty Quantification

Speaker: Adam SUŁEK (Sano Centre for Computational Medicine)

kccm_AS.docx

33 Isolating Somatic Variants

Speaker: Elżbieta WIERCIAK (AGH University of Science and Technology)

Wierciak_Elzbieta_abstract.docx

34 Explainable variational autoencoders for automatic annotation of hematopoietic stem and progenitor cells from scRNA-seq

Speaker: Maja BŁAŻEJEWICZ (Jagiellonian University)

Maja_Blazejewicz_KCCM_abstract-2.docx

12:50 Lunch and posters

K7: Keynote 7

35 Opportunities for AI in Modern Cyberinfrastructure: The Case of Scientific Workflow Management

Speaker: Ewa DEELMAN (University of Southern California)

CT6: 3 Contributed talks

36 Analytical RVE theory of dispersed media and its applications

Speaker: Vladimir MITYUSHEV (Politechnika Krakowska)

MB-VHT-Mityushev.docx

37 Enhancing neutron measurement techniques for heavy ion beam cancer therapy

Speaker: Leszek GRZANKA

CR39-analysis-abstract-Sawczyszyn.docx

38 CT-based heart digital twin can improve estimation of vectorcardiographic derived positions of the electrical activity

Speakers: Krzysztof MALINOWSKI (Jagiellonian University Medical College), Michał SZAFARCZYK (Jagiellonian University Medical College)

Szafarczyk_Malinowski_Abstract.docx

15:30 Coffee break and posters

S: Summing up